rs49787792 SNP Detail

Summary

• ID
  rs49787792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10991520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCCATA AGCGTGGCAA
  CAATATATCA TCCTGGAGAT TTAGGCTCAC ATACTCATTC AAAACACAGA ACCATTCTTA
  AAACCACTTA TTGAAAGGGA ACAATCCAGA GCCCTGAGTT AAATATAAGT CCTGTCATCA
  TAGGTAATTA TAAGTATTAT TCAGTCAGCT CAACCAGTTC GCCCTGAGCA CCACTGACAC
  R
  AATGTATTAG GGTTAGGGGT GAAGCTCCTT GATAACACCC CCTGCCTAGC ATGTGCAAGA
  CCCTGAGTTC AATCTGGAAT ATGGGTAACA TCATCAGCAC ATGAAATGCT AAACTGGAAC
  AGCATCTTTG GGTCATTCTT TTGAGTGCTA GAGGCAACCT TATCCTCATT TACAGGTCTG
  ACTTAGATCC GTTTCTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741560	NES17678370	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	A	A	G		G	G	A	G		A
ss324260883	CHEV_13_10940730	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49787792					SNP	A	A	G	A	G	A	A	A	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741560	NES17678370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10991520 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	481 bp proximal
Rr278201	regulatory region 278201	556 bp proximal