rs49790019 SNP Detail

Summary

• ID
  rs49790019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118714400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TGCTTGTTAG TCTGATACCC
  R
  CAGAGACCAG AAGAGGAGCT GGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147316266	ENSMUSSNP1353939	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320472455	CHEV_2_118709655	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49790019					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118714400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	125 bp distal
Ivd	isovaleryl coenzyme A dehydrogenase	1012 bp downstream
Rr397218	regulatory region 397218	756 bp downstream
Rr397219	regulatory region 397219	83 bp downstream