rs49790076 SNP Detail

Summary

• ID
  rs49790076
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49012382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATACTAC GATTGAGGGG CATGGCTCAC CCTGGGCAGG
  AGAAGGAGCC CTACATGCAT CCTCTTGTGT CTGTGATTGA TGAAAGGAGG CTTGCCAGGA
  K
  TAGTGACATT TAAGCTAAGC TGAAACCTGA AGATGTTGCA TGAGCTTTCT CTGGGGAAAT
  GTCAACAAAT GCCTACTCAC CCAAGCTAAG GCACCAACC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62763245	NES17343749	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	G	T		G	G	G	G		T
ss145722392	ENSMUSSNP2598508	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss325410146	CHEV_17_48844679	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49790076					SNP	T	T	T	T	T	T	T	G	T	G	T	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763245	NES17343749	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49012382 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	958 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	958 bp proximal
Rr392702	regulatory region 392702	1600 bp upstream