rs49791235 SNP Detail

Summary

• ID
  rs49791235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82961415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC AAAGGGGCCC AGAGGGTCTG
  Y
  GGCAGTGGTC ACCTGAAACT GGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132466466	ENSMUSSNP1223826	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323766751	CHEV_11_82884091	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49791235					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82961415 () rs orientation: forward

Symbol	Name	Function Class
Rr452898	regulatory region 452898	1487 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103643	transcription start site region 103643	1293 bp downstream
Tssr103644	transcription start site region 103644	1240 bp downstream
Tssr103645	transcription start site region 103645	1069 bp downstream
Tssr103646	transcription start site region 103646	995 bp downstream
Tssr103647	transcription start site region 103647	839 bp downstream
Tssr103648	transcription start site region 103648	759 bp downstream
Tssr103649	transcription start site region 103649	711 bp downstream