rs49791503 SNP Detail

Summary

• ID
  rs49791503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98887305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCCTCTG TCCCCTGAGG
  GAGGCCCGGG AGGAGGGCCC AAGAAGAAGT TGCCTGTGTA ATCCGCAAAG GCACCTGGAG
  CGAGACTCTT TGGAATCCTG GACAGTAGGT CCCTGCCTTT TGCATCCCCT GGGAATCCTG
  AGTCCTGTGC TTTGACAGCT CCTGCTATAA ACTTCAGCAC ACCTTTTTCA GAATTAGTTA
  Y
  ATTTAAAGGG ACTCTGTTAA GTTTGTGAGG GGCTTTGATA GTTCATTGGT CATTCACTGG
  TCACACTCCT AACTTGGTTG ATTTCTAAAA AGGAAAATAT ATATGTGAAC AAAGACTTGA
  GATGCAGCCG CCTTTAAACA CAGCTGTCTT TTGGTCCAGA TAGTGAAGCA CGCGATCTAC
  CGCATTTTTA GACCTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61685128	NES17645808	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T		C
ss324133998	CHEV_12_100159256	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49791503					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685128	NES17645808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98887305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	327 bp distal
Rr403444	regulatory region 403444	528 bp downstream
Rr470976	regulatory region 470976	424 bp distal
Rr470977	regulatory region 470977	615 bp distal
Rr470978	regulatory region 470978	730 bp proximal
Tssr114655	transcription start site region 114655	493 bp downstream
Tssr114656	transcription start site region 114656	427 bp downstream
Tssr114657	transcription start site region 114657	412 bp downstream
Tssr114658	transcription start site region 114658	384 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates