rs49794389 SNP Detail

Summary

• ID
  rs49794389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76042864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTCTGA TGTAACAATT
  ACAAGTGTTG GCAGGTCAGG GACGCCACCC TCCCCCGGAG CTTGTCTCCC CTACCAAGGC
  TTTATAATAC CCCTTTGTTT GAGCTCAGTT AGCTGCTTCC TGGCTTGACA GCCCTCTGTC
  CTTTCATTCT TTTAAAGGTT ACTTTCCTAT TTCTTACACA GGCATTCAAC AAAGTCCAGA
  R
  TCAGCTAGAA ACTCTTTGTG CCCCTTAAAA AAAAAAAAAT CATACAAGCA TTCAAGTGTT
  CAGCTCTGAT CCTGTGTTCT GATCAAAGGT TTTAGCTCTA CTGTCTTTCA TCAGAATCTC
  TGCTCAGTCC TGTGGGAACA GCTCACCTGC TGGAAGCCAC CAGGCTACAC AGGTTCTAGG
  AGTTCATTCC AGCTTTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63566417	NES16968252	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49794389					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63566417	NES16968252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76042864 () rs orientation: forward

Symbol	Name	Function Class
Rr390932	regulatory region 390932	within coordinates