rs49795494 SNP Detail

Summary

• ID
  rs49795494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63282920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTTAAG CAGAATCATG
  TGGCTTTGCA CTAAAGACAC AGCTGAGTCA TAGGAAAGCA GGACATGAGG ACATGTCCTC
  ACAGTAACTG GACACGGGCC ACCCTGCCTG CTTATCAGAC CTTGGCAACC GTGAACCCTG
  TGACAGTTGC CATTCGGGTT CCTATTTCTA ACTCATGCAA AAGTGAGTAA ATACTATGAA
  R
  TGCCACATTA GCATATGGTT AGGTGGGAAA CCTGAGAACA ATTAAGTAGA ATGTGGTCCT
  GCATAATCAG TTACTCATGT GGAGTGGCTA GGGTTGGGAC ATCTTCCAGC TTCTAGTGGA
  AAAAGACCAA ACAAGCAAAG TCAAGCACCT CGGTGTTTCA AGTTAACAGA GGACAGGTGT
  GCCCTCTGTG CCCTGCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61818480	NES17756639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49795494					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818480	NES17756639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63282920 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	593 bp downstream
Rr273239	regulatory region 273239	1681 bp proximal
Rr276922	regulatory region 276922	within coordinates
Rr276923	regulatory region 276923	280 bp proximal
Rr284650	regulatory region 284650	1120 bp distal
Rr284651	regulatory region 284651	1765 bp proximal