rs49796827 SNP Detail

Summary

• ID
  rs49796827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:65108957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTTGAA TAGATTATAA
  GCAAGAAAGT TTAATGTCAG CATCCCTTTA AGAAATCAAA TATCAAAGTA TGTTTTAGGA
  GAGTTTGTAT CTAGAATATT CATGTAAAAC TTATGAGCAA GCTTTCATTT TGATCAGACT
  TATCATTTTT GTAATAAAAA TGGAGACTCA TGCAGCAATT GTTGATGAAT TCATTTGGGG
  R
  AGGTACACAA AATAGAGATT AACATTGTCT TGAAGTAAAT TTTTCTCTAA ATCTATTATC
  TTCCTACCAG AATGTTTTAA CTGTTTTGGT TTTGTTTCAA GTTCCTGTGC CTTTTAATTT
  CCACCATGAA GTGTTATATT TTTAATGTCC TTGACAAAGC TAGCCACCTT GATTAGCAGC
  TCAACTCTTG GGACAGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss137832455	ENSMUSSNP6449627	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49796827					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65108957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fkbp3	FK506 binding protein 3			249 bp downstream
Prpf39	pre-mRNA processing factor 39			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr113604	transcription start site region 113604			449 bp downstream