rs49797246 SNP Detail

Summary

• ID
  rs49797246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAGTA GGTCTTCAGT
  AAATATTTAT TGAATGACTA AGAAGGAAGG GTTAGTCAGA AAAGGAGTCC AAAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA CGACGACGAC
  GACTGAGTTA TCAAAACTCA CAAGAAGAGC TGGCTATGAT GGCGGAAGCC AGAACCCAGC
  Y
  ACTTGATAGG ATGAGACAAG AGGTTTCCAA GTTCAGGGCC TGCTTGGGCT AGAGTGAGTT
  CAAGGCTATC TCGGGCAACT TTAGGGAGAA TCTTTTTCAA TTTTTAGAGA GGAAGAAGAG
  GGCTAGGGAT TTGGCTCAGT GGTAAAGTGT TGCCTAGCAC TGAGAGACTA GGTTCAGGTT
  CAGTCGCCAG CAATACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396138	ENSMUSSNP4545767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49797246					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388521 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1216 bp proximal
Cpgi21660	CpG island 21660	1932 bp proximal
Gm10023	predicted gene 10023	700 bp downstream
Gm22540	predicted gene, 22540	709 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	921 bp distal
Rr203857	regulatory region 203857	955 bp distal
Rr206312	regulatory region 206312	279 bp proximal
Rr209143	regulatory region 209143	121 bp distal