rs49797346 SNP Detail

Summary

• ID
  rs49797346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40507088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCCTG CTGCCTCTGC
  GGAGAGCGTG GAGGACACTG ACATCTTTGC CCCTCTCTCT ACCTTCCACA CAAGATGTCA
  GCCTTGGGGT GCCTGGCGCA GGCGCCTGGT ATCTACATTT TCCCTACATC CTCCCACAGG
  GGATCTATTT GGGAGACAGC CTCAGCGGCC TGCCGTTTAC TACTCAAAGA GGCTAATAAG
  R
  ATTCATTTGG TGCTGTCTTC AGGTGAAGGC ACAGAGGCTA AAGGACCGCG GCCATTTCTT
  CCTGTTATGC AATCATCTGT GGCAGCCAGA CATGACCTCT GTGTCTGCTC CCTAGAGTCC
  CGGGAGCAGA AGTCACAGCT CGGCTGCTTC CCAGGACTAG CTTACCTCCT CAGCAGTCCC
  TAGAATGTGC CCATAGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273383	NES16894437	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G	A	A	A	A	A	A	A	G
ss147067408	ENSMUSSNP2594679	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49797346					SNP	G	G	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273383	NES16894437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40507088 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	1488 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	1039 bp downstream
Tssr93027	transcription start site region 93027	1029 bp downstream