rs49797531 SNP Detail

Summary

• ID
  rs49797531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40082178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG CATAGAGAAA ATAAAAAGAA
  Y
  GACAAGACCA GGGAAGTAGA ATATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144620692	ENSMUSSNP1322154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322624621	CHEV_8_40714491	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49797531					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40082178 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	108 bp downstream
Tssr81027	transcription start site region 81027	211 bp downstream
Tssr81028	transcription start site region 81028	261 bp downstream
Tssr81029	transcription start site region 81029	380 bp downstream
Tssr81030	transcription start site region 81030	502 bp downstream
Tssr81031	transcription start site region 81031	1196 bp downstream