rs49797888 SNP Detail

Summary

• ID
  rs49797888
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55204738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC TCCAAAGACC TTGCTACCTT
  A
  GCTTAGGGAC ACATATAGAG TGTCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139574325	ENSMUSSNP968444	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324641222	CHEV_14_55586118	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49797888					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55204738 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	1477 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	354 bp upstream
Rr407057	regulatory region 407057	within coordinates
Rr492378	regulatory region 492378	687 bp distal
Rr492379	regulatory region 492379	150 bp distal
Rr492380	regulatory region 492380	954 bp proximal
Tssr4419	transcription start site region 4419	979 bp upstream
Tssr4420	transcription start site region 4420	866 bp upstream
Tssr4421	transcription start site region 4421	860 bp upstream
Tssr4422	transcription start site region 4422	808 bp upstream
Tssr4423	transcription start site region 4423	782 bp upstream
Tssr4424	transcription start site region 4424	744 bp upstream
Tssr4425	transcription start site region 4425	631 bp upstream
Tssr125718	transcription start site region 125718	1391 bp upstream
Tssr125719	transcription start site region 125719	1470 bp upstream
Tssr125720	transcription start site region 125720	1500 bp upstream
Tssr125721	transcription start site region 125721	1520 bp upstream
Tssr125722	transcription start site region 125722	1945 bp upstream
Tssr128732	transcription start site region 128732	1985 bp upstream
Tssr128733	transcription start site region 128733	1950 bp upstream
Tssr128734	transcription start site region 128734	1922 bp upstream
Tssr128735	transcription start site region 128735	1879 bp upstream
Tssr128736	transcription start site region 128736	1847 bp upstream
Tssr128737	transcription start site region 128737	1820 bp upstream
Tssr128738	transcription start site region 128738	1808 bp upstream
Tssr128739	transcription start site region 128739	1457 bp upstream
Tssr128740	transcription start site region 128740	1387 bp upstream
Tssr128741	transcription start site region 128741	1314 bp upstream
Tssr128742	transcription start site region 128742	696 bp upstream
Tssr128743	transcription start site region 128743	673 bp upstream
Tssr128744	transcription start site region 128744	344 bp upstream
Tssr128745	transcription start site region 128745	59 bp upstream
Tssr128746	transcription start site region 128746	671 bp downstream
Tssr128747	transcription start site region 128747	700 bp downstream
Tssr128748	transcription start site region 128748	719 bp downstream
Tssr128749	transcription start site region 128749	782 bp downstream
Tssr128750	transcription start site region 128750	801 bp downstream
Tssr128751	transcription start site region 128751	818 bp downstream
Tssr128752	transcription start site region 128752	871 bp downstream
Tssr128753	transcription start site region 128753	1060 bp downstream
Tssr128754	transcription start site region 128754	1139 bp downstream