rs49798489 SNP Detail

Summary

• ID
  rs49798489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109750136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG AAACTCTTTG GAAATAGAGA
  R
  TTCAGGCAGA AAGAGAACTG ACTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147206244	ENSMUSSNP6457321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320456109	CHEV_2_109759948	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49798489					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109750136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	930 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562510	regulatory region 562510	205 bp distal
Rr562512	regulatory region 562512	1968 bp distal
Rr562513	regulatory region 562513	1580 bp distal
Rr562514	regulatory region 562514	230 bp proximal