rs49799352 SNP Detail

Summary

• ID
  rs49799352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79295454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTAAA AGACATCTGT
  TCATTTATTG CATGTACATT GTGGCATGCA TGCTCTGGCA CGTGTGTAGA GGTCAGAGGA
  CTTGTGGGAA TTGGTTCTCT CCTTCCACCA TGTGGGTCCC GGAGACCAAC TTCATACAGT
  GAGGCTAGGG GACCCCAAAT GGTTTTTATA GATCCATTTT CCATGTGTCC CAGAGGTCAC
  R
  GTCAAGACAG GAGAGGAATT CTGTGCGAAG TTAATCACTG GTCACATTTC TTTTAGAAAC
  TAGAGAGTTC TACAGACAGG TACTTCCCTA AATTATTTTA ATGACAAAGA ATCTAGCTAA
  GGTCTTTCTT TCCTTGCTTT GTGAAAGGGT ACAACTCGGG AAACTCAATA TGGTAGTTTT
  ATGTCACCTT GACAAAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61652841	NES17600563	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49799352					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61652841	NES17600563	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79295454 () rs orientation: forward

Symbol	Name	Function Class
Rr387481	regulatory region 387481	within coordinates
Tssr116835	transcription start site region 116835	1078 bp downstream
Zfyve26	zinc finger, FYVE domain containing 26	within coordinates