rs49799981 SNP Detail

Summary

• ID
  rs49799981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100912224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCACTAG CCTCTCTGCG
  CGGAGGGCAT CTTTTGCGGC TCTCTTCCCC ACTGACAGGC CTAAAGCGGT GAAACTGATG
  GTGCCGCAAG CTTCGGAGCC CTAAATCAGC CAGGGAACCT GAATAGGAAC CCTGAGCCTC
  CCGAGTGGGG GCGGATGCCC GCCGGGAGCA CCTGAGCAGC AGGCTGATAC GGTCCTCGAT
  R
  CGCTCCTCCG CGGCCTGCGA CAGACCCCGC TTCTCTTCGC AGGCCTCAGC CCCGGCCTCA
  GACCTCTCCC GCGGCTGCTC CTCCATTGCA AAGGCCCGCA GGTTTGAACG CCACAGAAAA
  TAACCCAGCA GTTCTTCCCG CCACGAAATT GGTTTCCGGA AGTTCCTACC CTTCCGGAAG
  GGTCCCGCCC CTTCCGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685766	NES15536532	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49799981					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685766	NES15536532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100912224 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	within coordinates
Rr280869	regulatory region 280869	within coordinates
Tssr123809	transcription start site region 123809	87 bp downstream
Tssr123810	transcription start site region 123810	128 bp downstream