rs49800075 SNP Detail

Summary

• ID
  rs49800075
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24008891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TGAGAAGCCG GGACTCTAAC
  S
  GGGAGCAAGT GTAGAGGGGG CTTGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145332841	ENSMUSSNP2043603	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325327375	CHEV_17_23926884	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49800075					SNP	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24008891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	534 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	787 bp upstream
Gm52285	predicted gene, 52285	285 bp downstream
Rr339285	regulatory region 339285	within coordinates
Srrm2	serine/arginine repetitive matrix 2	615 bp upstream
Tssr142954	transcription start site region 142954	708 bp upstream
Tssr146666	transcription start site region 146666	4 bp upstream