rs49800447 SNP Detail

Summary

• ID
  rs49800447
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC AGTAAGAGAT CTTGTCTCAA
  A
  ACTGTAACTA AAAAATGGCC CAGCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144517191	ENSMUSSNP2561622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49800447					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721165 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	689 bp downstream
Myl10	myosin, light chain 10, regulatory	835 bp upstream
Rr127468	regulatory region 127468	165 bp distal
Rr127469	regulatory region 127469	636 bp proximal
Tssr49256	transcription start site region 49256	782 bp downstream
Tssr49257	transcription start site region 49257	509 bp upstream
Tssr49258	transcription start site region 49258	645 bp upstream
Tssr49259	transcription start site region 49259	708 bp upstream
Tssr49260	transcription start site region 49260	773 bp upstream
Tssr49261	transcription start site region 49261	1285 bp upstream
Tssr49262	transcription start site region 49262	1303 bp upstream
Tssr49263	transcription start site region 49263	1346 bp upstream
Tssr49264	transcription start site region 49264	1356 bp upstream
Tssr49265	transcription start site region 49265	1810 bp upstream
Tssr49266	transcription start site region 49266	1832 bp upstream
Tssr49267	transcription start site region 49267	1902 bp upstream