rs49800828 SNP Detail

Summary

• ID
  rs49800828
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57437148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATTCCT TATTTAAAAC
  CTAAAGATCT TACTGATGTA TGAAAAAACA GCAATTCTGC ATTTTCATCA AGACTTCAAT
  TTTCTTGATG TGCCGTTTTG TGCAGACACA AAAGTAATCA TGCCCAGTCA TTTTCTGGTT
  GAATGTTTCT GTGTCTTTAC ACTAATGTTT CTCTATAATG CCTTCTTAAT GTCGTCATTC
  K
  GGCCTCATTA TCTCTCCTTA GGCATTGTTC TGGTTGTTTT TAGATGATTT TTCAATACTG
  TTTAGTTTAA AGAATTCAAA ATTCCTGTAT TGTATTAACA GTTAAGCAAG TAAGCTAACG
  CTCCAGGACT TTTCCTTTAA TCTCAGCACT GTTGCGTAAT TGTGCTAATT CTTTGTGGTG
  TGTTCTTACT AGTTTGTTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136519676	ENSMUSSNP1990718	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49800828					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57437148 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	within coordinates
Gm26631	predicted gene, 26631	1422 bp downstream
Tssr85310	transcription start site region 85310	910 bp downstream