rs49800951 SNP Detail

Summary

• ID
  rs49800951
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGC TGTGTTTGCC TTACTTGAGA
  T
  ATGCAGTCAT ATCAGTTGGT TAGTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139557193	ENSMUSSNP1357458	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324635236	CHEV_14_54795048	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49800951					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412830 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1762 bp distal
Rr492148	regulatory region 492148	981 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	898 bp upstream
Traj42	T cell receptor alpha joining 42	400 bp upstream
Traj43	T cell receptor alpha joining 43	575 bp downstream
Traj44	T cell receptor alpha joining 44	1623 bp downstream
Tssr125558	transcription start site region 125558	1839 bp downstream
Tssr125559	transcription start site region 125559	1819 bp downstream
Tssr125560	transcription start site region 125560	1783 bp downstream
Tssr125561	transcription start site region 125561	1769 bp downstream
Tssr125562	transcription start site region 125562	972 bp downstream
Tssr125563	transcription start site region 125563	747 bp downstream
Tssr125564	transcription start site region 125564	494 bp downstream
Tssr125565	transcription start site region 125565	405 bp downstream
Tssr125566	transcription start site region 125566	601 bp upstream
Tssr125567	transcription start site region 125567	835 bp upstream
Tssr125568	transcription start site region 125568	854 bp upstream
Tssr125569	transcription start site region 125569	880 bp upstream
Tssr125570	transcription start site region 125570	898 bp upstream
Tssr128543	transcription start site region 128543	1284 bp downstream