rs49801462 SNP Detail

Summary

• ID
  rs49801462
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCCTC CTCCTCCTCC
  TCTTCTTCTT CGGCCTCCCG TGCCCTTCCA GCCCAGGACC CACCCATGGA GAAGGCTTTG
  AGCATGTTTT CAGACGACTT TGGCAGTTTT ATGCTGCCCC ACTCGGAGCC CCTGGCCTTC
  CCAGGCAAGT GCTGGGGCTC TGAGGGGAGG GGAGGGCCAC AGGTGGGGGA CATCTGCTCC
  W
  GGCCATCGCC GAGCATGCTG TGGCCACCCA CCTGCCAGAC ATAGGTGCCG CATGGGTCAC
  AGCCATATGT GGCTGTCAAG GTAGACCTGG CCACCAAGAC AGATGTGGCT ACGATATAGG
  TGGGCTACCT GGGACCCTAG GGGTGAGATG TGAATCAAAT AGTCTCATAT GGCCAGTGTC
  ATAGCGGGAG CCCTGGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736003	ENSMUSSNP5993170	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49801462					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	197 bp distal
Gm70184	predicted gene, 70184	978 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1800 bp downstream
Tssr40053	transcription start site region 40053	1239 bp downstream
Tssr40054	transcription start site region 40054	361 bp downstream
Tssr40055	transcription start site region 40055	348 bp downstream
Tssr40056	transcription start site region 40056	327 bp downstream
Tssr40057	transcription start site region 40057	266 bp downstream
Tssr40058	transcription start site region 40058	239 bp downstream
Tssr40059	transcription start site region 40059	215 bp downstream
Tssr40060	transcription start site region 40060	155 bp downstream
Tssr40061	transcription start site region 40061	145 bp downstream
Tssr40062	transcription start site region 40062	471 bp upstream
Tssr40063	transcription start site region 40063	1959 bp upstream
Tssr44314	transcription start site region 44314	586 bp downstream
Tssr44315	transcription start site region 44315	1997 bp downstream