rs49801632 SNP Detail

Summary

• ID
  rs49801632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT CTTTAAAAAC AAAACAACAA
  Y
  ATAGTAATTT TGTGAATGAG GCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145091493	ENSMUSSNP6544370	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322693707	CHEV_8_71611660	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49801632					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2			975 bp upstream
Cpgi20406	CpG island 20406			742 bp proximal
Rr400869	regulatory region 400869			725 bp upstream
Rr664484	regulatory region 664484			395 bp proximal
Rr664485	regulatory region 664485			1451 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1			Intron
				Noncoding-Transcript-Variant
Tssr77656	transcription start site region 77656			955 bp upstream
Tssr77657	transcription start site region 77657			972 bp upstream
Tssr77658	transcription start site region 77658			992 bp upstream
Tssr81518	transcription start site region 81518			1439 bp downstream