rs49801806 SNP Detail

Summary

• ID
  rs49801806
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122294796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTGCGG TGAAATGATA
  GCATCTGTAC CTGGTGTGGA TTTGCCCTCT GGGAACCATT TGTTGGCTGC ATGAAGAAAT
  CTTTCCAAAA TTGATAAGGA TTGGTCATGT CTTTCTGTGC TTGACGTGTG CATCTCCAAA
  CAGCCCTAGC GTCTGCATTC CAGAAAGGAC AGACCTTCTG ACCCCAGTGG TGACAAAATA
  K
  CTTCACTGCC TCGAGCAGGT AGAGTGCCAC ATCCCTGGGC TCTTCCGGTG TGTATAAAGC
  TGCCTGGAGG TCTTAGCCAG AGCTAAAGTC ACGTAGAATA GGGATTTGTT CCCTCCAAGG
  GGACCTGAGC AGGAAGGATG AGACTCATAT TGGTGGGGGG GTGGGCTGAG AAAGCCCTCT
  CCTCTGAGGG CTAACACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ
ss52524811	NES15586789	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ
rs49801806					SNP	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524811	NES15586789	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122294796 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	350 bp downstream
Gm63496	predicted gene, 63496	107 bp downstream
Tssr127312	transcription start site region 127312	954 bp upstream
Tssr130315	transcription start site region 130315	678 bp downstream