rs49801947 SNP Detail

Summary

• ID
  rs49801947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTA CTTCTCCAGA TTTGGCTCTG
  Y
  AAATAAGATA GCGAGCAACT GAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147442949	ENSMUSSNP3400425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321314003	CHEV_4_129255190	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49801947					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471739 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr600280	regulatory region 600280	1987 bp distal
Rr600281	regulatory region 600281	864 bp distal
Rr600282	regulatory region 600282	627 bp distal
Rr600283	regulatory region 600283	593 bp proximal
Rr600284	regulatory region 600284	1898 bp proximal
Tssr43532	transcription start site region 43532	566 bp downstream
Tssr43533	transcription start site region 43533	575 bp downstream
Tssr43534	transcription start site region 43534	589 bp downstream