rs49801985 SNP Detail

Summary

• ID
  rs49801985
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92703817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTACCAG TACACCCAGC
  TCCCTGTGGT CTTGTTTTCA TACTGTGGAG TGGGATCTAG TCAATGAGTC AGCTTTGTAG
  GTTCGCGAGG ACCCCTGGGG CTAGCAATAC ACAGAACTCA GAGTGCTCTT TATATGAGTG
  AGCAATTATG AACACTTTGG AAATCTTTGC AAATGCCTCC CCATTTGAAA TAATTTGCTT
  K
  GAAAGAATTG TAGACTCAGG AGAGAGCGCA AATGTCCAAG ATCCCATATA GCCTTCTGGA
  GCTGTTTCCA ATGGCAAACA CATCTTACAC ATCTATACCC CACCACCAAA CCAGGACTGC
  AGCTTTGTGG CAATATAGTG GTTAAATAAA ACCTCTGTGT TTCATTAGCT CTCACTTCTG
  TAAATTTTTT TGTAAGATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148834806	ENSMUSSNP1601879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49801985					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92703817 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	within coordinates
Rr114837	regulatory region 114837	1617 bp distal
Rr123707	regulatory region 123707	1747 bp distal
Rr125475	regulatory region 125475	616 bp distal
Tssr47317	transcription start site region 47317	888 bp downstream