rs49804820 SNP Detail

Summary

• ID
  rs49804820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:55493865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCTAAT TATGCTACCC
  AAAAATCCGT TTGCCATGTC CCACCCGTAG AACTAAAGGA AGCCTGTCCA CACTTAGGTT
  TGCTTGTTTG TTTTTTTGTT TGTTTGTTTG TTTGTTTGTT TTTCGACAGG GTTTCTCTGT
  GTAGCTCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA ATCAAAAATC
  Y
  ACCTGCCTCT GCCTCCTGAG TGCTGGGATT AAAGGCATGC ACCACCATGC CTGGCCACAC
  TTAGTTTTTC ACTGGTCAAT AAAGTTACTG GCAGCCAACG CCCTAGTCAT GGAGACAGAA
  GCATGTTGGT CTGCATTCAG CCTGACTCAG AGCAAAACCT ACTGGAGGTG AAATGAAGGG
  AGTTTGACTG TGCTTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145790239	ENSMUSSNP5491850	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49804820					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:55493865 () rs orientation: forward

Symbol	Name	Function Class
Rr392767	regulatory region 392767	within coordinates