rs49805509 SNP Detail

Summary

• ID
  rs49805509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54510894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCGTTCC TCCACATGat ttttatttta
  ttatgcaatt tttaaaaaaa agtttatttt gccaggaatg atggtgcaca cttgaattgt
  agcagtaaca aggtagagga aggcaaattt ctgtcatttc taggtctaca gagtgagttt
  Y
  aggccagttg gggctacata gtaaaaccct ttctcTTTGT CAGtctctct ctgtctttgt
  ctctgtctca tacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
  ATCAGTATAG AATCTTGCCA TTGTGTACGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149125912	ENSMUSSNP1840831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss319725502	CHEV_1_54528579	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49805509					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54510894 () rs orientation: forward

Symbol	Name	Function Class
Pgap1	post-GPI attachment to proteins 1	1265 bp downstream