rs49805644 SNP Detail

Summary

• ID
  rs49805644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94797541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACGTCT TGATACAAAT
  GAACACATAT CCAGAGAGAA GCTAAGTTAG CAGATTCATC TAGCCCCTAA ATGCCATAAA
  CACTTCGTGT GACCCTGGTG TTCCCTGCTT TCAGTTAGTT TACTTAGTCC TTGTCTTTCA
  TCAGCACGGC ACATCTCGGG TTTACTGATG AAGACTATGA GAAGTCCTCC CCTGTCTCAG
  R
  TTCATTTCGC CCTTCTGCTC ACTTTTCCTC CTTCGCATCC TCTCCTCTTT ATGCCCAAAC
  AGAACAAGGC TACCGCTTTC CACCAAGACA ATGGGCTTTT CCTAACTCTC CCTGCCTACC
  CCACCAGCCG CCCCTGCCTG CGGGATCATC TGTATGTTTG ATCTTCACTA GAGGTGCTGG
  AGCAAGGTCC ACAGTAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60512646	NES16528915	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49805644					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512646	NES16528915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94797541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	431 bp proximal
Gm31407	predicted gene, 31407	1546 bp upstream
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	within coordinates
Rr520239	regulatory region 520239	621 bp distal
Rr520240	regulatory region 520240	859 bp distal
Rr520241	regulatory region 520241	36 bp proximal
Rr520242	regulatory region 520242	963 bp proximal
Tssr142241	transcription start site region 142241	1717 bp upstream
Tssr142242	transcription start site region 142242	1616 bp upstream
Tssr142243	transcription start site region 142243	1542 bp upstream
Tssr142244	transcription start site region 142244	1529 bp upstream
Tssr142245	transcription start site region 142245	692 bp downstream
Tssr142246	transcription start site region 142246	788 bp downstream
Tssr142247	transcription start site region 142247	894 bp downstream
Tssr142248	transcription start site region 142248	925 bp downstream
Tssr142249	transcription start site region 142249	971 bp downstream
Tssr142250	transcription start site region 142250	1024 bp downstream
Tssr142251	transcription start site region 142251	1056 bp downstream