rs49806691 SNP Detail

Summary

• ID
  rs49806691
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA CTAGACTCAC TGCAACTGAG
  T
  TTACTAAATA AAGCACAAGG TCTGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809894	ENSMUSSNP5687263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320711424	CHEV_3_37537016	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49806691					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1587 bp proximal
Rr575523	regulatory region 575523	1363 bp proximal
Rr575524	regulatory region 575524	1997 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1853 bp upstream
Tssr28908	transcription start site region 28908	1570 bp upstream
Tssr28909	transcription start site region 28909	1811 bp upstream
Tssr28910	transcription start site region 28910	1834 bp upstream
Tssr28911	transcription start site region 28911	1851 bp upstream
Tssr28912	transcription start site region 28912	1891 bp upstream