rs49806694 SNP Detail

Summary

• ID
  rs49806694
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACCAGA AAGCCTAACA
  CATGAAATGG CAAGCAGTTA AGAGGCCATA CAAATTACTG ACCACTTGTG GAACCATGAC
  CTTACAGCAG CCCTTTTTAA ATAGGAATGA AGGCCCAGAG ACATCTGGTG GGAATTTGGA
  TCCCAATAAT CTCTGTGCAG AGGAATCACC CCCTGGTTCC TAAGCTTCCC TAAATAAGGC
  M
  TATCATACTC TTGAGTGTGA GTCTCAGTAC CTCAAATCCC AGACACAAAA GCCTCTAAGG
  TCACAAGTAT CCCCTCAGCA CCTGTCACAA CACACCCCCT AGCTGGTGTT ACATACTTGG
  CTTCTGGAGA TTTGAAGTTG AATGGCACAC ACTAGAAGGC TTGGAGAGCA GCAAGCAAAA
  GATACTTTTC ATTAAGGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445536	NES15941773	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	A	C	C	C		A	C	C	A		C
ss135766549	ENSMUSSNP1691008	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
ss320920386	CHEV_3_123210097	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49806694					SNP	C	C	A	C	A	C	A	A	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445536	NES15941773	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	759 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	582 bp downstream
Rr397991	regulatory region 397991	145 bp downstream
Rr584523	regulatory region 584523	260 bp distal
Rr584524	regulatory region 584524	125 bp distal
Rr584525	regulatory region 584525	1195 bp proximal
Rr584526	regulatory region 584526	1740 bp proximal
Snhg8	small nucleolar RNA host gene 8	373 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	758 bp downstream
Tssr31551	transcription start site region 31551	1371 bp upstream
Tssr31552	transcription start site region 31552	1409 bp upstream
Tssr35502	transcription start site region 35502	1151 bp downstream
Tssr35503	transcription start site region 35503	1736 bp downstream