rs49806869 SNP Detail

Summary

• ID
  rs49806869
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98938267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGCGCACC TTGAAAACTG TTCACGAGTC AGGCGTGGCT
  CCTACGGAGA CTGAATCCAA CGCCAACCTG GGCAGACTCC TGAGTTTAAA GACTTTTAAG
  M
  GATCTTAGCG GGGGGGCCCC CCTCACAACA CACCCACTCA CCCACTGCAC CACCAAAAAA
  ACACGTGCCA CGTGGGCCTG AACTCAGCTG TAGGGGGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148463549	ENSMUSSNP3352364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss325079644	CHEV_15_98870817	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49806869					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98938267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	16 bp distal
Gm41399	predicted gene, 41399	850 bp upstream
Gm62755	predicted gene, 62755	179 bp downstream
Rr509290	regulatory region 509290	within coordinates
Rr509291	regulatory region 509291	99 bp proximal
Rr509292	regulatory region 509292	615 bp proximal