rs49806918 SNP Detail

Summary

• ID
  rs49806918
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTTCCT CAGGGCCTGC
  CCTCGGCCAC ACCCTCTGCT CCCAGTGCCC CGTTGAGGAG GGAGGGAGGA AGAGAGTGAA
  TGAAGCATGC TATGTCCCAC AGTCCCCTCC TCCCAGGCCC TGTGATGAAG ACACTGGGGA
  TGTTCAGCCC AGGACTTAGG TGAAGGCTCT AGTGCCCATG TGGACAGGTG GGAACTCTGG
  S
  CACAAGGCAT AGCTACACAT CTGGCAGACT CCTCAGACCC TGTCTGTGTG TTTGGAGTAT
  GGAGACCTCA CAACTCTATA CTCAGAACGG TCTTCTCAGC CCTATTGACA AGGTGACTTC
  CCTCTCTCCC CGCTGTCCCT TCTCCCACCC ACTCATCCTC TCTCCTGTCC CTCTGAGCTG
  CAGAGACATG GGATGGAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288899	NES16903814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49806918					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288899	NES16903814	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560440 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	980 bp distal
Gm48276	predicted gene, 48276	1977 bp downstream
Rr434319	regulatory region 434319	1552 bp proximal
Tssr3254	transcription start site region 3254	1335 bp downstream
Tssr3255	transcription start site region 3255	1592 bp downstream
Tssr3256	transcription start site region 3256	1641 bp downstream
Tssr94201	transcription start site region 94201	1094 bp downstream
Tssr98205	transcription start site region 98205	1167 bp upstream
Tssr98206	transcription start site region 98206	1089 bp upstream
Tssr98207	transcription start site region 98207	1372 bp downstream