rs49807264 SNP Detail

Summary

• ID
  rs49807264
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTGGT GGAACTGCCA
  GATTTATAGA CCTTATTGCA GACCCTAAAA TCTGAAAGAT ATGGTGGAAA AGGTTTAAAA
  CAACAACAAT CCCACCAGAA CAGAACTTTC TCAAAGTGTG CAACAGCTAT GAACTTTACG
  AGCGCCAAGC AAGGTTTTAT GCCTGCTTTA CAGATTGGTG AACTAAGGGG TGTGTGTGTG
  G
  GGGGGGGGGG GGAGCAGATC GTTTCCGTTA AATGCCTTTC TCAAGGTCAC GACGGTGCAA
  AAACCACCGG GGAAAGAGGA TCTCAGGTCT CCGACCTTTC TGCACTGGAA AGGCAGCACG
  GCGCAACGTG CTCCGCTCTG CTCGAAATCC CAACGCCACA AGGTTTTCGG GTTAAGGATG
  GACACCCCGA ATGCTCTCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss137998142	ENSMUSSNP6115532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49807264					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	11 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	27 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	515 bp upstream
Tssr114724	transcription start site region 114724	1288 bp upstream
Tssr114725	transcription start site region 114725	1332 bp upstream
Tssr114726	transcription start site region 114726	1382 bp upstream
Tssr117352	transcription start site region 117352	1025 bp downstream
Tssr117353	transcription start site region 117353	1151 bp downstream
Tssr117354	transcription start site region 117354	1229 bp downstream