rs49807728 SNP Detail

Summary

• ID
  rs49807728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161804667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA TATGTTTAGG CCGGGCCAGG
  K
  TTTTTGGCTT CTTTTTCGGT CCTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145926317	ENSMUSSNP2716572	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49807728					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161804667 () rs orientation: forward

Symbol	Name	Function Class
4930558K02Rik	RIKEN cDNA 4930558K02 gene	Intron
Gm38304	predicted gene, 38304	within coordinates
Rr396470	regulatory region 396470	354 bp downstream
Rr421879	regulatory region 421879	3 bp distal
Rr421880	regulatory region 421880	543 bp distal
Rr421881	regulatory region 421881	477 bp distal