rs49810634 SNP Detail

Summary

• ID
  rs49810634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGACTA AAAAGCCAAA
  ACAAAACAAA AAGAAAAAAA AAAAAAACCA CTGCAGCACT GCATAGCTGG AAGGGGTGGG
  GCTGACATCT CCTTAGTCCT CCCACCCCTC AGCCAAGCCC CACCACAGGG CTAGTGTTCA
  CACTAGGTGC CATGCATTGG ATCAGCGGAG CAGGGCGTTT GCTCACCTCT CCCTTCTGTC
  Y
  GGCTCCACAG CGGCCCTTCG GAGTGGTGTA TGAGATGGAA GTTGACACAC TGGAGACCAC
  TTGCCATGCT TTGGACCCCA CCCCGCTGGC AAACTGTTCT GTGAGGCAGC TGACTGAGCA
  CGTGAGTGCT GCCTTGTGGT TGGTTGGTGG GTGGGTGGGT GGGTGGGAGC TGCCCAGCCA
  CCACAGTTCA GCAAAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681325	NES17064328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49810634					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681325	NES17064328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713064 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Rr513336	regulatory region 513336	within coordinates
Rr513337	regulatory region 513337	17 bp proximal
Tssr4818	transcription start site region 4818	1490 bp downstream
Tssr4819	transcription start site region 4819	1017 bp upstream
Tssr4820	transcription start site region 4820	1633 bp upstream
Tssr137558	transcription start site region 137558	1733 bp downstream
Tssr137559	transcription start site region 137559	1537 bp downstream
Tssr137560	transcription start site region 137560	1494 bp downstream
Tssr137561	transcription start site region 137561	1469 bp downstream
Tssr137562	transcription start site region 137562	1143 bp downstream
Tssr137563	transcription start site region 137563	73 bp downstream
Tssr137564	transcription start site region 137564	43 bp downstream
Tssr137565	transcription start site region 137565	within coordinates
Tssr137566	transcription start site region 137566	98 bp upstream
Tssr137567	transcription start site region 137567	463 bp upstream
Tssr137568	transcription start site region 137568	482 bp upstream
Tssr137569	transcription start site region 137569	513 bp upstream
Tssr137570	transcription start site region 137570	528 bp upstream
Tssr137571	transcription start site region 137571	862 bp upstream
Tssr137572	transcription start site region 137572	885 bp upstream
Tssr137573	transcription start site region 137573	979 bp upstream
Tssr137574	transcription start site region 137574	1000 bp upstream
Tssr137575	transcription start site region 137575	1006 bp upstream
Tssr137576	transcription start site region 137576	1686 bp upstream
Tssr140503	transcription start site region 140503	1981 bp upstream
Tssr140504	transcription start site region 140504	36 bp downstream
Tssr140505	transcription start site region 140505	109 bp downstream
Tssr140506	transcription start site region 140506	516 bp downstream
Tssr140507	transcription start site region 140507	899 bp downstream
Tssr140508	transcription start site region 140508	943 bp downstream
Tssr140509	transcription start site region 140509	962 bp downstream
Tssr140510	transcription start site region 140510	977 bp downstream
Tssr140511	transcription start site region 140511	1020 bp downstream