rs49810646 SNP Detail

Summary

• ID
  rs49810646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115568737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAAGAGAA AGGCAGCAGG CTTAGGAGTG CAGTTTAGCT
  CTGAGCACGT ATCCAGCCCG TATGAGACTT TGAATTCTAC CTCTAGCACT GTAAAAGGAA
  R
  AGGAAATGAA AAGAAGAAAA GGGGGAGAAC CCTCAGACTT CCTTGCTAAT TAAATTCACC
  CCCATCAAGA ACCATCTCTT GCGGATTGTA CTTTGCTCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60931177	NES16195604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49810646					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931177	NES16195604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115568737 () rs orientation: forward

Symbol	Name	Function Class
Mkrn2os	makorin, ring finger protein 2, opposite strand	within coordinates
Rr637000	regulatory region 637000	790 bp proximal
Tssr62513	transcription start site region 62513	717 bp downstream
Tssr62514	transcription start site region 62514	734 bp downstream
Tssr62515	transcription start site region 62515	754 bp downstream
Tssr62516	transcription start site region 62516	767 bp downstream
Tssr62517	transcription start site region 62517	795 bp downstream