rs49810893 SNP Detail

Summary

• ID
  rs49810893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27955321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG AGTCGGCACT GTTTCCATTT
  Y
  CTAGACTTGT TCTTCATTGA GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52210447	NES15215931	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C		T
ss147035171	ENSMUSSNP4471154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
ss323281679	CHEV_10_27799131	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs49810893					SNP	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210447	NES15215931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27955321 () rs orientation: forward

Symbol	Name	Function Class
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Rr214336	regulatory region 214336	721 bp distal
Rr222425	regulatory region 222425	935 bp proximal
Rr224630	regulatory region 224630	1320 bp distal