rs49810917 SNP Detail

Summary

• ID
  rs49810917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100978586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA TCTCCATTCT TGGCCTTTCT
  R
  GGGGGCTAAT CTCTGAGGGC TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148482186	ENSMUSSNP4454374	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325085180	CHEV_15_100911136	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49810917					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100978586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	1175 bp distal
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	660 bp downstream
Rr509900	regulatory region 509900	1648 bp distal
Rr509901	regulatory region 509901	1597 bp distal
Rr509902	regulatory region 509902	1141 bp proximal
Tssr136517	transcription start site region 136517	1875 bp upstream
Tssr136518	transcription start site region 136518	1773 bp upstream