rs49811712 SNP Detail

Summary

• ID
  rs49811712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29237130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAACTTGCAT TCCGTCAACC GGGACCTCAA GTAGGTACTG
  GCTGAAAGGA TCGGGGTTGA GGACCCTTCT GGCACCTGTC CCGCCCGGAT CCCGCGCCAG
  Y
  CTGCCCAGTC ACGGGCCTCT CTCCTTTATT CACAGTCCGC TGTCACTTTC GCTCATCTCC
  CGGTCCTAGT CAGCCTCTCA GGGACTCCTT GTCTCCCGTC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146396465	ENSMUSSNP1824468	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49811712					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29237130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	within coordinates
Med27	mediator complex subunit 27	within coordinates
Rr396846	regulatory region 396846	149 bp downstream
Tssr17001	transcription start site region 17001	276 bp downstream