rs49812484 SNP Detail

Summary

• ID
  rs49812484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86577453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG ACCGGGAAGG CACGTCGCGG
  Y
  TGAGCTGGCC GCCCGCCTGC CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136760230	ENSMUSSNP770988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323057512	CHEV_9_86589433	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49812484					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86577453 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	60 bp upstream
Cpgi22104	CpG island 22104	within coordinates
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	within coordinates
Rr205233	regulatory region 205233	1583 bp proximal
Rr206830	regulatory region 206830	within coordinates
Tssr90786	transcription start site region 90786	240 bp downstream
Tssr90787	transcription start site region 90787	270 bp downstream
Tssr90788	transcription start site region 90788	371 bp downstream
Tssr90789	transcription start site region 90789	438 bp downstream
Tssr90790	transcription start site region 90790	497 bp downstream