rs49812604 SNP Detail

Summary

• ID
  rs49812604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGGTTG CAACTTGGAG
  GGACTTGGCT TGCTCTGAAG AGGCTGGTAG TACCTGGTCC TCTCTAGGTG GGCTGGTGTG
  AGACTCTAAC CTTTCAGGCC TATCCATCCT TAGCCCAGCC TCAAACCTGA AATCCTGAAT
  ACAGGCGGAC TGGCTCTCAC CAGCATTGTG TTCTTTGAGA TAAAAGGTTT GCTTTTCCTG
  Y
  TCTTACTCTT GCTGAGTCCC TCTTCAGATG GCCTCTGAGT CAATCCCAGA TCTTGGCAGT
  ATCTTGGGCA GGTGAAATGT AGGCTTAGAA TTAAGTTGGA ATATACTTTT CTTTCCCAAA
  GCAATTCAGT GGCCTGTTTC TGTTGTCAAG TATATTAATC CCTATTTCCT CCATGTGCTG
  TCTGCAGTTC TAGAAGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647326	ENSMUSSNP5488404	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss322398787	CHEV_7_117913426	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49812604					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369119 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	567 bp upstream
Cpgi19579	CpG island 19579	679 bp distal
Rr653308	regulatory region 653308	1696 bp distal
Rr653309	regulatory region 653309	991 bp distal
Rr653310	regulatory region 653310	291 bp distal
Rr653311	regulatory region 653311	750 bp proximal
Tssr68503	transcription start site region 68503	1812 bp downstream
Tssr68504	transcription start site region 68504	1785 bp downstream
Tssr68505	transcription start site region 68505	1756 bp downstream
Tssr68506	transcription start site region 68506	1719 bp downstream
Tssr68507	transcription start site region 68507	1278 bp downstream
Tssr68508	transcription start site region 68508	1065 bp downstream
Tssr68509	transcription start site region 68509	714 bp upstream
Tssr74265	transcription start site region 74265	547 bp upstream