rs49812900 SNP Detail

Summary

• ID
  rs49812900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89585790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAATGC CCAGCTTGAG
  GTGCCTTTCT TATTGGCCAC CTCTGCACTA AGTAAGGCAG TGTTGTCATT TTCAACTCAG
  CTAAGAAAAA CCTAAGTTGG AAAGGCTGAA CCCCTTTTGC CAATGCATGC TAATCTCCAG
  AGGTAGACAT AGGAACCATG GGCTTCCTCT TCCCTATCCA AGTTTAAAGA TAGGAGTCAT
  W
  TCAAGTTAAC AAATAACTTG CTGGGCAGTG GTGGTGCACA CATTTATCCC AGCACTTGGG
  AGGCAGAGGC AGGCAGATCT CTGAGTTCAA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG
  GACAGCCAGG GCTACACAGA GAAACCCTGT CTTGAAAACA AACAACCAAA CCAAACAACA
  ACAACAACAA ACCTCAAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61194596	NES16707690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49812900					SNP	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194596	NES16707690	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89585790 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51708	transcription start site region 51708	334 bp downstream
Tssr51709	transcription start site region 51709	511 bp downstream
Tssr51710	transcription start site region 51710	1677 bp downstream