rs49816096 SNP Detail

Summary

• ID
  rs49816096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110075593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG GCACTGCCTG GCTAGAGGCA
  R
  ATGGCCCAGG CCTGGGTGGA GTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449784	NES16839755	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49816096					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449784	NES16839755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110075593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22373	CpG island 22373	within coordinates
Cspg5	chondroitin sulfate proteoglycan 5	within coordinates
Rr687075	regulatory region 687075	1733 bp distal
Rr687076	regulatory region 687076	984 bp distal
Rr687077	regulatory region 687077	450 bp distal
Tssr87332	transcription start site region 87332	1581 bp downstream
Tssr87333	transcription start site region 87333	1561 bp downstream
Tssr87334	transcription start site region 87334	1335 bp downstream
Tssr87335	transcription start site region 87335	1108 bp downstream
Tssr87336	transcription start site region 87336	1034 bp downstream
Tssr87337	transcription start site region 87337	1007 bp downstream
Tssr87338	transcription start site region 87338	289 bp downstream
Tssr87339	transcription start site region 87339	735 bp upstream