rs49816883 SNP Detail

Summary

• ID
  rs49816883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113063542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC CAAAGCATGG CCTAAGGAAG
  Y
  CACGCTGCGG CCGGACAGGC ACGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52694593	NES15543279	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49816883					SNP	C	T	C	C	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52694593	NES15543279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113063542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6101	CpG island 6101	within coordinates
Dhx29	DExH-box helicase 29	446 bp upstream
Mtrex	Mtr4 exosome RNA helicase	within coordinates
Rr280952	regulatory region 280952	within coordinates
Rr369777	regulatory region 369777	283 bp upstream
Tssr121155	transcription start site region 121155	634 bp upstream
Tssr124081	transcription start site region 124081	348 bp downstream
Tssr124082	transcription start site region 124082	455 bp downstream
Tssr124083	transcription start site region 124083	590 bp downstream