rs49818606 SNP Detail

Summary

• ID
  rs49818606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT AGAATTGCCA ATGTCTTTCT
  R
  TAACTGGGAC CAGCCTGATG GGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62737802	NES17343053	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49818606					SNP	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737802	NES17343053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670252 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	1090 bp upstream
Rr527086	regulatory region 527086	600 bp proximal
Rr527087	regulatory region 527087	1101 bp proximal
Tssr144671	transcription start site region 144671	659 bp upstream
Tssr144672	transcription start site region 144672	961 bp upstream
Tssr144673	transcription start site region 144673	1002 bp upstream
Tssr144674	transcription start site region 144674	1025 bp upstream
Tssr144675	transcription start site region 144675	1062 bp upstream
Tssr148115	transcription start site region 148115	1990 bp downstream