rs49818611 SNP Detail

Summary

• ID
  rs49818611
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35286024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTT GTCCACTAGG TCCAGAGGGA
  C
  GCCTAGGCGG CGCGGAGAAT GCATC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148813221	ENSMUSSNP518962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322157987	CHEV_7_36371618	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49818611					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35286024 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	within coordinates
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	1017 bp upstream
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	269 bp downstream
Tssr65908	transcription start site region 65908	309 bp downstream
Tssr65909	transcription start site region 65909	289 bp downstream
Tssr72043	transcription start site region 72043	1049 bp upstream
Tssr72044	transcription start site region 72044	1032 bp upstream
Tssr72045	transcription start site region 72045	997 bp upstream
Tssr72046	transcription start site region 72046	338 bp downstream