rs49818628 SNP Detail

Summary

• ID
  rs49818628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:115665455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGATGCT CTTGTCAGAC AAGTCATAGT CAGTAGATGC
  ATTGTTCTTG ATCTGTTTGC CATCCTTGAT GAGGTAGCCT TGACCAATCT TGTAAATCTT
  M
  TTGTTAATCT CTGTTCGGTG ATGGTAGCCT TTCTGCCCAG CTCGAGCCAC AGAGAAGGCG
  ATACGGGCAT GGTGCCAGGC TCCAATACAG GCAACTTTGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62053054	NES17142494	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49818628					SNP	A	A	A	A	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62053054	NES17142494	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:115665455 () rs orientation: forward

Symbol	Name	Function Class
Gm6035	predicted gene 6035	within coordinates
Tssr124162	transcription start site region 124162	874 bp downstream