rs49818937 SNP Detail

Summary

• ID
  rs49818937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11022736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTAGCT CACAGGAATC
  TGCCTGCCTC TGCCTCCCAG TGCTGGGAGT AGGGCTTTTT TATTTTATGT ATATGTTTTA
  CTTGCCTGTG TATCTGTACA CCACATGTGG GAAGTGCTAG TGTAGATCCT CTTAGAACTA
  GAATTACAGA TGGTTGGAAA CCACCGTGCG AATGCTGAGA ATCAAACTGT AGTCTTCTGG
  R
  AGAGCAAGCA GTACTCTTGA CACCATCTCT CCAGCCCCAA GCACCAGACT TTTGAGCCAA
  GGAAATTCCA TGAATTCAGA TGATAGATCC TTGAGGCGAT TGGAAACAGT AAGTGTCTAG
  AGCCAAAGAA TTGCAAAATT GAAGAAATAG GCTTTTAAAA CTGACAGGGG GCCTAGTTAC
  CAAACTTCAC TTACATTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52593811	NES15688345	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49818937					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52593811	NES15688345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11022736 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	within coordinates
Cpgi7962	CpG island 7962	1020 bp distal
Gm60496	predicted gene, 60496	within coordinates
Rr404684	regulatory region 404684	1353 bp downstream
Rr511717	regulatory region 511717	1472 bp distal
Rr511718	regulatory region 511718	492 bp distal
Rsl1d1	ribosomal L1 domain containing 1	1580 bp upstream
Tssr137080	transcription start site region 137080	1424 bp downstream
Tssr140008	transcription start site region 140008	1560 bp upstream