rs49819228 SNP Detail

Summary

• ID
  rs49819228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40504944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAAC CCATTCCCCT
  AGACACAGAA CTGTTCCATT TTCTGTGACT TTGGGATTGT GGACTGAAGG GACAATGCCC
  TTTCTTTTCC ATTTTGACAC CCAGACAGCC TTGTATAAAA TCGTACCTAG CTGAGCTCAC
  CAGAGGCTCA TGGCCACATG CAAAAGGAAT CATCTTTCTC TCCTTTTCAG ATGGGAAGAC
  R
  GACTGAGACA GCCTCTGACT TGCTCAAGAT AAGATAGTGA GGACCCTGCT TTGACAAAGA
  GGACCTCTGC TTGGCTGAGA GCATGCATAG GGAGTCTGCT ACACAGAATG GCCTTTATCA
  CACAAGAGAC CATGGGCTTT TCCACATGTC TTGGAGCCTC GGTTTATATC TGTAGAATAA
  GGAGGATACG TCTCATTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273399	NES16894448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49819228					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273399	NES16894448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40504944 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	1063 bp upstream
Rr430230	regulatory region 430230	264 bp proximal
Rr430231	regulatory region 430231	342 bp proximal
Rr430232	regulatory region 430232	391 bp proximal
Rr430233	regulatory region 430233	626 bp proximal
Rr430234	regulatory region 430234	1140 bp proximal
Tssr93026	transcription start site region 93026	1039 bp upstream
Tssr93027	transcription start site region 93027	1109 bp upstream