rs49819645 SNP Detail

Summary

• ID
  rs49819645
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCGGGG CGCCGTGGTG
  AGTTGCAGGC TGTGCCCTGA CTTTGTCAGC TCTTACTAAA TCACGTCTAA GGATAAAGAG
  GACAGCATTG CCTGTTGATG AGCCCAGTTC TTCATTCTGC TTTTCCTACA GTGCACTGAA
  CAGCAGAGTA GATGGTTTAC ATCGCAAATA CATAGTTACA ATGAACAAAG ACCAAACACA
  S
  GAGCCCGAAA GAATACCATG CTTCCAGATA GCAAAGGGGA AGATGTTTCA GAACAGTGAA
  TGTGGGGTTT AGAGATGCAA GCCCTTCTGA CTGATCTCTT TGAGCATCTG TAAGTAGTCT
  CTGCTAGTTG CCTGTAGATT TGGCATTCCA GTTTGCATTA AAACACACAT AGCAATTAAA
  ATGTGATTTT TTTTTAAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60500610	NES16526874	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49819645					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500610	NES16526874	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355651 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	894 bp upstream
Rr518505	regulatory region 518505	410 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	882 bp proximal
Rr518508	regulatory region 518508	1013 bp proximal
Tssr139145	transcription start site region 139145	1595 bp downstream