rs49819754 SNP Detail

Summary

• ID
  rs49819754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGACCT GGGGCTTCCA
  AAACTATAGG TGTTTTCAGA GAGGGACAGG CTCCCAGAAG TCTGCCCTTA CCTCTAGAGT
  ATCCATAGCT GGCAGCATGC TACTAAATGC TAGCTAGCGT CTCTGCCCCC TCCTGTGTGC
  CCTATTCACC TGCATCACTG CGATCGGTCC CAAAGCTACC CTGTGTAATT CCCCCTAACC
  Y
  CAAGTGAACC AGAACTCAAG TGTGCTACAA CAAAAGAAAT TTTATTTAAA AATACTTTTT
  TTTTACAGAC ACGGGTGCTT GAAAAAGCTC TTTAGTTAAC TGTATGGAAA TGAAAAAAAT
  TAATAAATAA CATTAGTATA ACAGACCTCT AATTAGTATA ACAGACCTCT ACATATCAGT
  ACACTGGCAA GACAACACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391619	ENSMUSSNP6343148	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49819754					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054252 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	21 bp downstream
Mcam	melanoma cell adhesion molecule	228 bp downstream
Rr383290	regulatory region 383290	1602 bp downstream
Rr677565	regulatory region 677565	1166 bp proximal
Rr677566	regulatory region 677566	1493 bp proximal
Rr677567	regulatory region 677567	1586 bp proximal
Tssr89112	transcription start site region 89112	1572 bp downstream
Tssr89113	transcription start site region 89113	1758 bp downstream